![]() |
Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
|
Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_023434-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 222aa MW: 25351.8 Da PI: 9.6196 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.7e-17 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT eEd++l d+++ +G+g W++Ia+ ++R++k+c++rw +yl NNU_023434-RA 9 RGFWTVEEDKILMDYIRVHGKGKWNRIAKVTDLKRCGKSCRLRWMNYL 56 799*****************************9*************97 PP | |||||||
2 | Myb_DNA-binding | 58.6 | 1.4e-18 | 62 | 107 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++ eEd+l+++++++lG++ W++Ia +++ gRt++q+k++w+++l NNU_023434-RA 62 RGEFSVEEDDLIIRLHNLLGNR-WSLIAGRVP-GRTDNQVKNHWNTHL 107 899*******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.446 | 1 | 56 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.58E-31 | 7 | 103 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-13 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 9 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.53E-11 | 12 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 12 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.756 | 57 | 111 | IPR017930 | Myb domain |
SMART | SM00717 | 8.5E-18 | 61 | 109 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-17 | 62 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.09E-12 | 64 | 107 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-26 | 64 | 111 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence Send to blast |
MEEKNHYKRG FWTVEEDKIL MDYIRVHGKG KWNRIAKVTD LKRCGKSCRL RWMNYLSPTV 60 KRGEFSVEED DLIIRLHNLL GNRWSLIAGR VPGRTDNQVK NHWNTHLSKK LGIRKEKGKL 120 GVSSSLSSSK KSNRVEEVLK LPTDSNSDLS TTCDSNSTKP VQPKLMKASI QNTVEALNKQ 180 DPAVGECFES SFWPFTDDLN SNSPTLTELL DGYPFDAAWH TL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 9 | 111 | 7 | 108 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010243029.1 | 1e-165 | PREDICTED: transcription factor WER-like | ||||
Swissprot | Q96276 | 1e-67 | MYB23_ARATH; Transcription factor MYB23 | ||||
TrEMBL | A5BI14 | 4e-87 | A5BI14_VITVI; Putative uncharacterized protein | ||||
TrEMBL | D7SHR3 | 4e-87 | D7SHR3_VITVI; Putative uncharacterized protein | ||||
STRING | VIT_17s0000g08480.t01 | 1e-86 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14750.1 | 2e-67 | myb domain protein 66 |